SNP Profiles matching NA 710

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
2._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
3._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
4._POUND_2_/A
__CCGGCC_AACCAACC__AA_
5._POUND_2_/A
__CCGGCC_AACCAACC__AA_
6._POUND_2_/A
__CCGGCC_AACCAACC__AA_
7._POUND_2_/A
__CCGGCC_AACCAACC__AA_
8._POUND_2_/A
__CCGGCC_AACCAACC__AA_
9._POUND_2_/A
__CCGGCC_AACCAACC__AA_
10._POUND_2_/A
__CCGGCC_AA_AACC__AA_
11._POUND_25_/A
__CCGGCC_AA_AACC__AA_
12._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
13._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
14._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
15._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
16._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
17._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
18._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
19._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
20._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
21._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
22._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
23._NA_286
__CCGGCC_AACCAACC__AA_
24._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
25._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
26._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
27._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
28._NA_286
__CCGGCC_AACCAACC__AA_
29._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
30._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
31._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
32._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
33._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
34._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
35._NA_286
__CCGGCC_AACCAACC__AA_
36._POUND_5_/C
__CCGGCC_AA_AGCC__AA_
37._RUQ_691
TTCCACGGCTGGACCGAACTGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTGGGGAACCCCTTGGGGTTACGG
1._RUQ_1504
AACCTTGGGGAACCCCTTGGGGTTACGG
2._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
3._RUQ_897
AACCCTGGGGAACCCCTTGGGGTTCCGG
4._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
5._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
6._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
7._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
8._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
9._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
10._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
11._POUND_25_/A
AACCTTGGGGAA_CC_GG___GG
12._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
13._RUQ_877
AACC-GGGGAACCCCTTGGGGTTCCCG
14._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
15._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
16._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
17._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
18._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
19._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
20._RUQ_801
AACCCCGGGGAACCCCTTGGGGTTCCGG
21._RUQ_1587
AACCCCGGGGAACCCCTTGGGGTTCCGG
22._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
23._NA_286
AACCCCGGGGAA_CC_GG___GG
24._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
25._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
26._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
27._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
28._NA_286
AACCCCGGGGAA_CC_GG___GG
29._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
30._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
31._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
32._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
33._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
34._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
35._NA_286
AACCCCGGGGAA_CC_GG___GG
36._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
37._RUQ_691
AACCTTGGGGAACCCCTTGGGGTTCCCG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
1._RUQ_1504
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
2._RUQ_515
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
3._RUQ_897
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
4._POUND_2_/A
_CCGG_CC___TT__TTCCAA
5._POUND_2_/A
_CCGG_CC___TT__TTCCAA
6._POUND_2_/A
_CCGG_CC___TT__TTCCAA
7._POUND_2_/A
_CCGG_CC___TT__TTCCAA
8._POUND_2_/A
_CCGG_CC___TT__TTCCAA
9._POUND_2_/A
_CCGG_CC___TT__TTCCAA
10._POUND_2_/A
_CCGG_CC___TT__TTCCAA
11._POUND_25_/A
_CCGG_CC___TT__TTCCAA
12._RUQ_468
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
13._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
14._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
15._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
16._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
17._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
18._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
19._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
20._RUQ_801
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
21._RUQ_1587
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
22._RUQ_1334
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
23._NA_286
_CCGG_CC___TT__TTGGAA
24._POUND_5_/C
_CCGG_CC___TT__TTGGAA
25._POUND_5_/C
_CCGG_CC___TT__TTGGAA
26._POUND_5_/C
_CCGG_CC___TT__TTGGAA
27._POUND_5_/C
_CCGG_CC___TT__TTGGAA
28._NA_286
_CCGG_CC___TT__TTGGAA
29._GC-01-101-5-18
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
30._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
31._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
32._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
33._GC-01-101-5-18
CCCCGGCCCCGGGGTT_TTCCTTGGAA
34._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
35._NA_286
_CCGG_CC______TTGGAA
36._POUND_5_/C
_CCGG_CC___TT__TTGGAA
37._RUQ_691
CCCCAGCCCCGGGGTTGTTTCCTTCGAA

Input profile: NA_710 RUQ_1588

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_232 RUQ_1504

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_27 RUQ_515

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CRU_70 RUQ_897

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

6._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

7._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

9._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

10._POUND_2_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

11._POUND_25_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

12._NA_756 RUQ_468

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._CRU_100 RUQ_877

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

19._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._NA_149 RUQ_801

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._NA_702 RUQ_1587

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_916 RUQ_1334

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

24._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

26._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

27._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

28._NA_286

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

29._NA_286 GC-01-101-5-18

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

30._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

33._NA_286 GC-01-101-5-18

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

34._POUND_5_/C GC-08-165-4-08

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._NA_286

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

36._POUND_5_/C

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

37._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484